Somogyi, ET., JM Bouteiller, JA. Glazier, M König, JK Medley, MH. Swat, and HM. Sauro. “libRoadRunner: a high performance SBML simulation and analysis library.” Bioinformatics 31, no. 20 (2015): 3315-3321.
Entus, R, B Aufderheide, and HM. Sauro. “Design and implementation of three incoherent feed-forward motif based biological concentration sensors.” Systems and synthetic biology 1, no. 3 (2007): 119-128.
Galdzicki, M, KP. Clancy, E Oberortner, M Pocock, JY. Quinn, CA. Rodriguez, N Roehner et al. “The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology.” Nature biotechnology 32, no. 6 (2014): 545.
Fell, DA., and HM. Sauro. “Metabolic control and its analysis.” The FEBS Journal 148, no. 3 (1985): 555-561.
Kim, KH., and HM. Sauro. “Adjusting phenotypes by noise control.” PLoS computational biology 8, no. 1 (2012): e1002344.
Kim, KH, H Qian, and HM. Sauro. “Nonlinear biochemical signal processing via noise propagation.” The Journal of chemical physics 139, no. 14 (2013): 10B608_1.
Sleight, SC., BA. Bartley, JA. Lieviant, and HM. Sauro. “In-Fusion BioBrick assembly and re-engineering.” Nucleic acids research 38, no. 8 (2010): 2624-2636.
Paladugu, SR., V. Chickarmane, A. Deckard, J. P. Frumkin, M. McCormack, and H. M. Sauro. “In silico evolution of functional modules in biochemical networks.” IEE Proceedings-Systems Biology 153, no. 4 (2006): 223-235.
Sauro, HM. Enzyme kinetics for systems biology. 2nd Edition, Future Skill Software, 2012.
Sauro, HM. Systems Biology: Introduction to Pathway Modeling, Future Skill Software, 2012.
Hucka, M, A Finney, HM. Sauro, H Bolouri, JC. Doyle, H Kitano, AP. Arkin et al. “The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.” Bioinformatics 19, no. 4 (2003): 524-531.
Medley, M, Choi K, Matthias K, Smith L, Gu S, Hellerstein J, Sealfon SC, Sauro HM Tellurium Notebooks – An Environment for Dynamical Model Development, Reproducibility, and Reuse (2018), PLoS Comp Bio,.